Find a complete list of publications on PubMed.
Primary Articles:
Takenaka, R, SM Simmerman, CA Schmidt, Eric H Albanese, Leila E Rieder*, and HS Malik* (2024) The Drosophila maternal-effect gene abnormal oocyte (ao) does not repress histone gene expression. bioRxiv: https://doi.org/10.1101/2024.09.17.613536
Hodkinson, L, and LE Rieder (2024) Cis element length variability does not confer differential transcription factor occupancy at the D. melanogaster histone locus. bioRxiv: https://doi.org/10.1101/2024.06.24.600460
O’Haren, T, T Aoki, LE Rieder (2024) Zelda is dispensable for Drosophila melanogaster histone gene expression. Molecular Biology of the Cell. PMID: 39661467
Hodkinson, L, J Gross, C Schmidt, PP Diaz-Saldana, T Aoki, and LE Rieder (2024) Sequence reliance of the Drosophila context-dependent transcription factor CLAMP. Genetics. PMID: 38775472
Gilbonio, HE, GL Puckett, E Nguyen, and LE Rieder (2023) A hybrid RNA FISH immunofluorescence protocol on Drosophila polytene chromosomes. BMC Research Notes 16(197). PMID: 37679799
Hodkinson, L*, C Smith*, HS Comstra… CA Schmidt**, and L Rieder** (2023) A bioinformatics screen reveals Hox and developmental transcription factor candidates at the Drosophila histone locus. */**Denotes equal contributors. BMC Genomic Data PMID: 37735352
Xie, M* , L Hodkinson*, HS Comstra, PP Diaz-Saldana, HE Gilbonio, JL Gross, RM Chavez, GL Puckett, T Aoki, P Schedl, and L. Rieder. MSL2 targets the histone genes in Drosophila virilis. Submitted to G3. BioRxiv: https://www.biorxiv.org/content/10.1101/2022.12.14.520423v1
Schmidt, C, LJ Hodkinson, HS Comstra, S Kahn, H Torres, and LE Rieder (2023) A cost-free CURE: Using bioinformatics to identify DNA-binding factors at a specific genomic locus. Journal of Microbiology and Biological Education. https://journals.asm.org/eprint/G5CIJ9UHPVYKYGBYFMK5/full
Hodkinson, LJ, JL Gross, and LE Rieder. 2022. A Muscular Dystrophy Case Study Illustrating the Phenotypic Effects of Mutation. CourseSource.
Xie, M, S Comstra, C Schmidt, LJ Hodkinson, and LE Rieder (submitted to microPublication Biology) Max is likely not at the Drosophila histone locus. BioRxiv: https://www.biorxiv.org/content/10.1101/2022.09.11.507040v1
Duan, JE*, LE Rieder*, A Huang, WT Jordan, III, M McKenney, S Watters, N Fawzi, and EN Larschan (2021) CLAMP and Zelda function together as pioneer transcription factors to promote Drosophila zygotic genome activation. ELife 10:e69937 *Equal contributors. PMID: 34342574
Koreski, KP, LE Rieder, LM McLain, A Chaubal, WF Marzluff*, RJ Duronio* (2020) Drosophila Histone Locus Body assembly and function involves multiple interactions. Molecular Biology of the Cell 1; 31(14): 1525-1537. *Equal contributors. PMID: 32401666
Rieder LE*, W Jordan 3rd*, EN Larschan. Targeting of the dosage-compensated male X-chromosome during early Drosophila development. Cell Reports. 2019; 29(13): 4268. PMID 31875538
Rieder LE*, Koreski KP*, Boltz KA, Kuzu G, Urban JA, Bowman SK, Zeidman A, Jordan W 3rd, Tolstorukov MY, Marzluff WF, Duronio RJ, Larschan EN. Histone locus regulation by the Drosophila dosage compensation adaptor protein CLAMP. Genes & Development. 2017; 31(14):1494-1508. PMID 28838946
Urban JA, Doherty CA, Jordan WT 3rd, Bliss JE, Feng J, Soruco MM, Rieder LE, Tsiarli MA, Larschan EN. The essential Drosophila CLAMP protein differentially regulates non-coding roX RNAs in male and females. Chromosome Research. 2017; 25(2):101-113. PMID 27995349
Rieder LE, Savva YA, Reyna MA, Chang YJ, Dorsky JS, Rezaei A, Reenan RA. Dynamic response of RNA editing to temperature in Drosophila. BMC Biology. 2015; 13:1. PMID 25555396
Rieder LE, Staber CJ, Hoopengardner B, Reenan RA. Tertiary structural elements determine the extent and specificity of messenger RNA editing. Nature Communications. 2013; 4:2232. PMID 23903876
Allaire NE, Rieder LE, Bienkowska J, Carulli JP. Experimental comparison and cross-validation of Affymetrix HT plate and cartridge array gene expression platforms. Genomics. 2008; 92(5):359-65. PMID 18672051
Rieder LE, Mensinger AF. Strategies for increasing growth of juvenile toadfish. The Biological Bulletin. 2001; 201(2):283-5. PMID 11687426
Reviews:
Jordan, WT III, LE Rieder, EN Larschan. Diverse genome topologies characterize dosage compensation across species. Trends in Genetics. 2019; 35(4):308-315. PMID 30808531
Rieder LE, Larschan EN. Wisdom from the fly. Trends in Genetics. 2014; 30(11):479-81. PMID 25161083
Savva YA*, Rieder LE*, Reenan RA. The ADAR protein family. Genome Biology. 2012; 13(12):252. PMID 23273215
Rieder LE, Reenan RA. The intricate relationship between RNA structure, editing, and splicing. Seminars in Cell & Developmental Biology. 2012; 23(3):281-8. PMID 22178616